How I Built A Custom Protein-Binding Dataset for Machine Learning A walkthrough on building an ML-friendly dataset with code, data visualizations, and cited sources.

How I Built A Custom Protein-Binding Dataset for Machine Learning

A walkthrough on building an ML-friendly dataset with code, data visualizations, and cited sources.

01 Aug, 24 - 33 min Read

Hyperjudge: Source-checking tool for doc validity A web app that checks the validity of linked sources in documents and webpages.

Hyperjudge: Source-checking tool for doc validity

A web app that checks the validity of linked sources in documents and webpages.

15 May, 24 - 2 min Read

Predicting the Effect of Mutations on PPIs Using AlphaFold How I used AlphaFold-Multimer, XGBoost, and 47,000 SLURM jobs to predict PPI outcomes with 91% AUC

Predicting the Effect of Mutations on PPIs Using AlphaFold

How I used AlphaFold-Multimer, XGBoost, and 47,000 SLURM jobs to predict PPI outcomes with 91% AUC

04 May, 24 - 20 min Read

Co-authorship in Nature Genetics with SickKids Part of my work at SickKids contributed to a research paper in Nature.

Co-authorship in Nature Genetics with SickKids

Part of my work at SickKids contributed to a research paper in Nature.

29 Mar, 24 - 3 min Read

VICI: in silico controls for PPI variants An open source command line tool to find P/LP and B/LB controls to test AF-M using PIONEER.

VICI: in silico controls for PPI variants

An open source command line tool to find P/LP and B/LB controls to test AF-M using PIONEER.

26 Sep, 23 - 2 min Read

DAMIA: Disease-Associated Missense Interactome Analysis Pipeline and command line utility for analyzing missense variant protein-protein interfaces in silico.

DAMIA: Disease-Associated Missense Interactome Analysis

Pipeline and command line utility for analyzing missense variant protein-protein interfaces in silico.

30 Apr, 23 - 14 min Read

Idiomics: handdrawn idiom illustrations A collection of free idiom illustrations for blogs and newsletters.

Idiomics: handdrawn idiom illustrations

A collection of free idiom illustrations for blogs and newsletters.

24 Mar, 22 - 1 min Read